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Characterization of Phytophthora infestans populations in northwestern Algeria during 2008-2014.

Identifieur interne : 000A49 ( Main/Exploration ); précédent : 000A48; suivant : 000A50

Characterization of Phytophthora infestans populations in northwestern Algeria during 2008-2014.

Auteurs : Fatma Zohra Rekad [Algérie] ; David Edward Llewelyn Cooke [Royaume-Uni] ; Ivana Puglisi [Italie] ; Eva Randall [Royaume-Uni] ; Yamina Guenaoui [Algérie] ; Zouaoui Bouznad [Algérie] ; Maria Evoli [Italie] ; Antonella Pane [Royaume-Uni] ; Leonardo Schena [Italie] ; Gaetano Magnano Di San Lio [Italie] ; Santa Olga Cacciola [Italie]

Source :

RBID : pubmed:28390504

Descripteurs français

English descriptors

Abstract

A total of 161 Phytophthora infestans isolates, collected from infected potato and tomato plants during 2008-2014, were characterized based on mating type, metalaxyl sensitivity and polymorphism at 12 simple sequence repeat (SSR) loci, in order to investigate the population of P. infestans in the north-west of Algeria, an emerging potato production region. The majority of isolates were of A2 mating type (112 isolates). A high percentage (89 %) of resistance to metalaxyl among isolates was detected. The metalaxyl resistant phenotype was present in both mating types with a higher percentage in A2 mating type isolates. SSR-based genotypic analysis of P. infestans population showed a low diversity. Genotype 13_A2 was the predominant in the population with a frequency of 67 % followed by 2_A1 (21 %) and 23_A1 (5 %). Genotype 23_A1 was detected only in tomato and potato isolates collected in 2013 and 2014.

DOI: 10.1016/j.funbio.2017.01.004
PubMed: 28390504


Affiliations:


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Le document en format XML

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<term>Alanine (analogs & derivatives)</term>
<term>Alanine (metabolism)</term>
<term>Algeria (MeSH)</term>
<term>Drug Resistance, Fungal (MeSH)</term>
<term>Fungicides, Industrial (metabolism)</term>
<term>Genes, Mating Type, Fungal (MeSH)</term>
<term>Lycopersicon esculentum (microbiology)</term>
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<term>Phytophthora infestans (isolation & purification)</term>
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<term>Phytophthora infestans</term>
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<term>Phytophthora infestans</term>
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<term>Lycopersicon esculentum</term>
<term>Solanum tuberosum</term>
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<term>Alanine</term>
<term>Fongicides industriels</term>
<term>Phytophthora infestans</term>
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<term>Phytophthora infestans</term>
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<term>Drug Resistance, Fungal</term>
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<term>Polymorphism, Genetic</term>
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<term>Algérie</term>
<term>Gènes fongiques du type conjugant</term>
<term>Polymorphisme génétique</term>
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<div type="abstract" xml:lang="en">A total of 161 Phytophthora infestans isolates, collected from infected potato and tomato plants during 2008-2014, were characterized based on mating type, metalaxyl sensitivity and polymorphism at 12 simple sequence repeat (SSR) loci, in order to investigate the population of P. infestans in the north-west of Algeria, an emerging potato production region. The majority of isolates were of A2 mating type (112 isolates). A high percentage (89 %) of resistance to metalaxyl among isolates was detected. The metalaxyl resistant phenotype was present in both mating types with a higher percentage in A2 mating type isolates. SSR-based genotypic analysis of P. infestans population showed a low diversity. Genotype 13_A2 was the predominant in the population with a frequency of 67 % followed by 2_A1 (21 %) and 23_A1 (5 %). Genotype 23_A1 was detected only in tomato and potato isolates collected in 2013 and 2014.</div>
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<AbstractText>A total of 161 Phytophthora infestans isolates, collected from infected potato and tomato plants during 2008-2014, were characterized based on mating type, metalaxyl sensitivity and polymorphism at 12 simple sequence repeat (SSR) loci, in order to investigate the population of P. infestans in the north-west of Algeria, an emerging potato production region. The majority of isolates were of A2 mating type (112 isolates). A high percentage (89 %) of resistance to metalaxyl among isolates was detected. The metalaxyl resistant phenotype was present in both mating types with a higher percentage in A2 mating type isolates. SSR-based genotypic analysis of P. infestans population showed a low diversity. Genotype 13_A2 was the predominant in the population with a frequency of 67 % followed by 2_A1 (21 %) and 23_A1 (5 %). Genotype 23_A1 was detected only in tomato and potato isolates collected in 2013 and 2014.</AbstractText>
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<Affiliation>The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, United Kingdom.</Affiliation>
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<LastName>Puglisi</LastName>
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<Initials>I</Initials>
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<Affiliation>Dipartimento di Agricoltura Alimentazione e Ambiente, Università degli Studi di Catania, Via Santa Sofia, 100, 95123, Catania, Italy.</Affiliation>
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</Author>
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<LastName>Randall</LastName>
<ForeName>Eva</ForeName>
<Initials>E</Initials>
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</AffiliationInfo>
</Author>
<Author ValidYN="Y">
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<ForeName>Yamina</ForeName>
<Initials>Y</Initials>
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</AffiliationInfo>
</Author>
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<Initials>Z</Initials>
<AffiliationInfo>
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</Author>
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<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Dipartimento di Agricoltura Alimentazione e Ambiente, Università degli Studi di Catania, Via Santa Sofia, 100, 95123, Catania, Italy.</Affiliation>
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<Month>02</Month>
<Day>06</Day>
</ArticleDate>
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<Country>Netherlands</Country>
<MedlineTA>Fungal Biol</MedlineTA>
<NlmUniqueID>101524465</NlmUniqueID>
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<RegistryNumber>0</RegistryNumber>
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<NameOfSubstance UI="C028175">metalaxyl</NameOfSubstance>
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<NameOfSubstance UI="D000409">Alanine</NameOfSubstance>
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</MeshHeading>
<MeshHeading>
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<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
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<MeshHeading>
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<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
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<DescriptorName UI="D055750" MajorTopicYN="N">Phytophthora infestans</DescriptorName>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<MeshHeading>
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</MeshHeading>
<MeshHeading>
<DescriptorName UI="D011198" MajorTopicYN="N">Solanum tuberosum</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="Y">Late blight</Keyword>
<Keyword MajorTopicYN="Y">Mating type</Keyword>
<Keyword MajorTopicYN="Y">Metalaxyl</Keyword>
<Keyword MajorTopicYN="Y">Potato</Keyword>
<Keyword MajorTopicYN="Y">SSR markers</Keyword>
<Keyword MajorTopicYN="Y">Tomato</Keyword>
</KeywordList>
</MedlineCitation>
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<Year>2016</Year>
<Month>08</Month>
<Day>08</Day>
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<Month>01</Month>
<Day>02</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2017</Year>
<Month>01</Month>
<Day>19</Day>
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<PubMedPubDate PubStatus="entrez">
<Year>2017</Year>
<Month>4</Month>
<Day>10</Day>
<Hour>6</Hour>
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<Minute>0</Minute>
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<Month>9</Month>
<Day>28</Day>
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<PublicationStatus>ppublish</PublicationStatus>
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<ArticleId IdType="pii">S1878-6146(17)30014-4</ArticleId>
<ArticleId IdType="doi">10.1016/j.funbio.2017.01.004</ArticleId>
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</PubmedData>
</pubmed>
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<list>
<country>
<li>Algérie</li>
<li>Italie</li>
<li>Royaume-Uni</li>
</country>
<region>
<li>Wilaya d'Alger</li>
</region>
<settlement>
<li>Alger</li>
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<name sortKey="Rekad, Fatma Zohra" sort="Rekad, Fatma Zohra" uniqKey="Rekad F" first="Fatma Zohra" last="Rekad">Fatma Zohra Rekad</name>
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<name sortKey="Randall, Eva" sort="Randall, Eva" uniqKey="Randall E" first="Eva" last="Randall">Eva Randall</name>
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<name sortKey="Cacciola, Santa Olga" sort="Cacciola, Santa Olga" uniqKey="Cacciola S" first="Santa Olga" last="Cacciola">Santa Olga Cacciola</name>
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<name sortKey="Schena, Leonardo" sort="Schena, Leonardo" uniqKey="Schena L" first="Leonardo" last="Schena">Leonardo Schena</name>
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