Characterization of Phytophthora infestans populations in northwestern Algeria during 2008-2014.
Identifieur interne : 000A49 ( Main/Exploration ); précédent : 000A48; suivant : 000A50Characterization of Phytophthora infestans populations in northwestern Algeria during 2008-2014.
Auteurs : Fatma Zohra Rekad [Algérie] ; David Edward Llewelyn Cooke [Royaume-Uni] ; Ivana Puglisi [Italie] ; Eva Randall [Royaume-Uni] ; Yamina Guenaoui [Algérie] ; Zouaoui Bouznad [Algérie] ; Maria Evoli [Italie] ; Antonella Pane [Royaume-Uni] ; Leonardo Schena [Italie] ; Gaetano Magnano Di San Lio [Italie] ; Santa Olga Cacciola [Italie]Source :
- Fungal biology [ 1878-6146 ] ; 2017.
Descripteurs français
- KwdFr :
- Alanine (analogues et dérivés), Alanine (métabolisme), Algérie (MeSH), Fongicides industriels (métabolisme), Gènes fongiques du type conjugant (MeSH), Lycopersicon esculentum (microbiologie), Phytophthora infestans (classification), Phytophthora infestans (génétique), Phytophthora infestans (isolement et purification), Phytophthora infestans (physiologie), Polymorphisme génétique (MeSH), Résistance des champignons aux médicaments (MeSH), Solanum tuberosum (microbiologie).
- MESH :
- analogues et dérivés : Alanine.
- génétique : Phytophthora infestans.
- isolement et purification : Phytophthora infestans.
- microbiologie : Lycopersicon esculentum, Solanum tuberosum.
- métabolisme : Alanine, Fongicides industriels, Phytophthora infestans.
- physiologie : Phytophthora infestans.
- Algérie, Gènes fongiques du type conjugant, Polymorphisme génétique, Résistance des champignons aux médicaments.
English descriptors
- KwdEn :
- Alanine (analogs & derivatives), Alanine (metabolism), Algeria (MeSH), Drug Resistance, Fungal (MeSH), Fungicides, Industrial (metabolism), Genes, Mating Type, Fungal (MeSH), Lycopersicon esculentum (microbiology), Phytophthora infestans (classification), Phytophthora infestans (genetics), Phytophthora infestans (isolation & purification), Phytophthora infestans (physiology), Polymorphism, Genetic (MeSH), Solanum tuberosum (microbiology).
- MESH :
- chemical , analogs & derivatives : Alanine.
- chemical , metabolism : Alanine, Fungicides, Industrial.
- classification : Phytophthora infestans.
- genetics : Phytophthora infestans.
- isolation & purification : Phytophthora infestans.
- microbiology : Lycopersicon esculentum, Solanum tuberosum.
- physiology : Phytophthora infestans.
- Algeria, Drug Resistance, Fungal, Genes, Mating Type, Fungal, Polymorphism, Genetic.
Abstract
A total of 161 Phytophthora infestans isolates, collected from infected potato and tomato plants during 2008-2014, were characterized based on mating type, metalaxyl sensitivity and polymorphism at 12 simple sequence repeat (SSR) loci, in order to investigate the population of P. infestans in the north-west of Algeria, an emerging potato production region. The majority of isolates were of A2 mating type (112 isolates). A high percentage (89 %) of resistance to metalaxyl among isolates was detected. The metalaxyl resistant phenotype was present in both mating types with a higher percentage in A2 mating type isolates. SSR-based genotypic analysis of P. infestans population showed a low diversity. Genotype 13_A2 was the predominant in the population with a frequency of 67 % followed by 2_A1 (21 %) and 23_A1 (5 %). Genotype 23_A1 was detected only in tomato and potato isolates collected in 2013 and 2014.
DOI: 10.1016/j.funbio.2017.01.004
PubMed: 28390504
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<author><name sortKey="Pane, Antonella" sort="Pane, Antonella" uniqKey="Pane A" first="Antonella" last="Pane">Antonella Pane</name>
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<author><name sortKey="Schena, Leonardo" sort="Schena, Leonardo" uniqKey="Schena L" first="Leonardo" last="Schena">Leonardo Schena</name>
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<author><name sortKey="Magnano Di San Lio, Gaetano" sort="Magnano Di San Lio, Gaetano" uniqKey="Magnano Di San Lio G" first="Gaetano" last="Magnano Di San Lio">Gaetano Magnano Di San Lio</name>
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<author><name sortKey="Cacciola, Santa Olga" sort="Cacciola, Santa Olga" uniqKey="Cacciola S" first="Santa Olga" last="Cacciola">Santa Olga Cacciola</name>
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<term>Fungicides, Industrial (metabolism)</term>
<term>Genes, Mating Type, Fungal (MeSH)</term>
<term>Lycopersicon esculentum (microbiology)</term>
<term>Phytophthora infestans (classification)</term>
<term>Phytophthora infestans (genetics)</term>
<term>Phytophthora infestans (isolation & purification)</term>
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<term>Gènes fongiques du type conjugant (MeSH)</term>
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<term>Phytophthora infestans (isolement et purification)</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Phytophthora infestans</term>
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<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Lycopersicon esculentum</term>
<term>Solanum tuberosum</term>
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<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Lycopersicon esculentum</term>
<term>Solanum tuberosum</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Alanine</term>
<term>Fongicides industriels</term>
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<term>Polymorphism, Genetic</term>
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<term>Gènes fongiques du type conjugant</term>
<term>Polymorphisme génétique</term>
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<front><div type="abstract" xml:lang="en">A total of 161 Phytophthora infestans isolates, collected from infected potato and tomato plants during 2008-2014, were characterized based on mating type, metalaxyl sensitivity and polymorphism at 12 simple sequence repeat (SSR) loci, in order to investigate the population of P. infestans in the north-west of Algeria, an emerging potato production region. The majority of isolates were of A2 mating type (112 isolates). A high percentage (89 %) of resistance to metalaxyl among isolates was detected. The metalaxyl resistant phenotype was present in both mating types with a higher percentage in A2 mating type isolates. SSR-based genotypic analysis of P. infestans population showed a low diversity. Genotype 13_A2 was the predominant in the population with a frequency of 67 % followed by 2_A1 (21 %) and 23_A1 (5 %). Genotype 23_A1 was detected only in tomato and potato isolates collected in 2013 and 2014.</div>
</front>
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<ELocationID EIdType="pii" ValidYN="Y">S1878-6146(17)30014-4</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.1016/j.funbio.2017.01.004</ELocationID>
<Abstract><AbstractText>A total of 161 Phytophthora infestans isolates, collected from infected potato and tomato plants during 2008-2014, were characterized based on mating type, metalaxyl sensitivity and polymorphism at 12 simple sequence repeat (SSR) loci, in order to investigate the population of P. infestans in the north-west of Algeria, an emerging potato production region. The majority of isolates were of A2 mating type (112 isolates). A high percentage (89 %) of resistance to metalaxyl among isolates was detected. The metalaxyl resistant phenotype was present in both mating types with a higher percentage in A2 mating type isolates. SSR-based genotypic analysis of P. infestans population showed a low diversity. Genotype 13_A2 was the predominant in the population with a frequency of 67 % followed by 2_A1 (21 %) and 23_A1 (5 %). Genotype 23_A1 was detected only in tomato and potato isolates collected in 2013 and 2014.</AbstractText>
<CopyrightInformation>Copyright © 2017 British Mycological Society. Published by Elsevier Ltd. All rights reserved.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rekad</LastName>
<ForeName>Fatma Zohra</ForeName>
<Initials>FZ</Initials>
<AffiliationInfo><Affiliation>Département d'Agronomie, Faculté des Sciences de la Nature et de la Vie, Université Abdelhamid Ibn Badis, Site 3-EX ITA, 27000, Mostaganem, Algeria. Electronic address: fatifz2001@yahoo.fr.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cooke</LastName>
<ForeName>David Edward Llewelyn</ForeName>
<Initials>DEL</Initials>
<AffiliationInfo><Affiliation>The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Puglisi</LastName>
<ForeName>Ivana</ForeName>
<Initials>I</Initials>
<AffiliationInfo><Affiliation>Dipartimento di Agricoltura Alimentazione e Ambiente, Università degli Studi di Catania, Via Santa Sofia, 100, 95123, Catania, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Randall</LastName>
<ForeName>Eva</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Guenaoui</LastName>
<ForeName>Yamina</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Département d'Agronomie, Faculté des Sciences de la Nature et de la Vie, Université Abdelhamid Ibn Badis, Site 3-EX ITA, 27000, Mostaganem, Algeria.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bouznad</LastName>
<ForeName>Zouaoui</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>Ecole Nationale Supérieure Agronomique (ENSA), 16200, El Harrach, Alger, Algeria.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Evoli</LastName>
<ForeName>Maria</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Dipartimento di Agricoltura Alimentazione e Ambiente, Università degli Studi di Catania, Via Santa Sofia, 100, 95123, Catania, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Pane</LastName>
<ForeName>Antonella</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Schena</LastName>
<ForeName>Leonardo</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Feo di Vito, 89122, Reggio Calabria, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Magnano di San Lio</LastName>
<ForeName>Gaetano</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Feo di Vito, 89122, Reggio Calabria, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cacciola</LastName>
<ForeName>Santa Olga</ForeName>
<Initials>SO</Initials>
<AffiliationInfo><Affiliation>Dipartimento di Agricoltura Alimentazione e Ambiente, Università degli Studi di Catania, Via Santa Sofia, 100, 95123, Catania, Italy. Electronic address: olgacacciola@unict.it.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2017</Year>
<Month>02</Month>
<Day>06</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Netherlands</Country>
<MedlineTA>Fungal Biol</MedlineTA>
<NlmUniqueID>101524465</NlmUniqueID>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005659">Fungicides, Industrial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>16K4M187IF</RegistryNumber>
<NameOfSubstance UI="C028175">metalaxyl</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>OF5P57N2ZX</RegistryNumber>
<NameOfSubstance UI="D000409">Alanine</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000409" MajorTopicYN="N">Alanine</DescriptorName>
<QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000462" MajorTopicYN="N">Algeria</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D025141" MajorTopicYN="N">Drug Resistance, Fungal</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005659" MajorTopicYN="N">Fungicides, Industrial</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D049770" MajorTopicYN="N">Genes, Mating Type, Fungal</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018551" MajorTopicYN="N">Lycopersicon esculentum</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D055750" MajorTopicYN="N">Phytophthora infestans</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011110" MajorTopicYN="N">Polymorphism, Genetic</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011198" MajorTopicYN="N">Solanum tuberosum</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Late blight</Keyword>
<Keyword MajorTopicYN="Y">Mating type</Keyword>
<Keyword MajorTopicYN="Y">Metalaxyl</Keyword>
<Keyword MajorTopicYN="Y">Potato</Keyword>
<Keyword MajorTopicYN="Y">SSR markers</Keyword>
<Keyword MajorTopicYN="Y">Tomato</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year>
<Month>08</Month>
<Day>08</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2017</Year>
<Month>01</Month>
<Day>02</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2017</Year>
<Month>01</Month>
<Day>19</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2017</Year>
<Month>4</Month>
<Day>10</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2017</Year>
<Month>4</Month>
<Day>10</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2017</Year>
<Month>9</Month>
<Day>28</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">28390504</ArticleId>
<ArticleId IdType="pii">S1878-6146(17)30014-4</ArticleId>
<ArticleId IdType="doi">10.1016/j.funbio.2017.01.004</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Algérie</li>
<li>Italie</li>
<li>Royaume-Uni</li>
</country>
<region><li>Wilaya d'Alger</li>
</region>
<settlement><li>Alger</li>
</settlement>
</list>
<tree><country name="Algérie"><noRegion><name sortKey="Rekad, Fatma Zohra" sort="Rekad, Fatma Zohra" uniqKey="Rekad F" first="Fatma Zohra" last="Rekad">Fatma Zohra Rekad</name>
</noRegion>
<name sortKey="Bouznad, Zouaoui" sort="Bouznad, Zouaoui" uniqKey="Bouznad Z" first="Zouaoui" last="Bouznad">Zouaoui Bouznad</name>
<name sortKey="Guenaoui, Yamina" sort="Guenaoui, Yamina" uniqKey="Guenaoui Y" first="Yamina" last="Guenaoui">Yamina Guenaoui</name>
</country>
<country name="Royaume-Uni"><noRegion><name sortKey="Cooke, David Edward Llewelyn" sort="Cooke, David Edward Llewelyn" uniqKey="Cooke D" first="David Edward Llewelyn" last="Cooke">David Edward Llewelyn Cooke</name>
</noRegion>
<name sortKey="Pane, Antonella" sort="Pane, Antonella" uniqKey="Pane A" first="Antonella" last="Pane">Antonella Pane</name>
<name sortKey="Randall, Eva" sort="Randall, Eva" uniqKey="Randall E" first="Eva" last="Randall">Eva Randall</name>
</country>
<country name="Italie"><noRegion><name sortKey="Puglisi, Ivana" sort="Puglisi, Ivana" uniqKey="Puglisi I" first="Ivana" last="Puglisi">Ivana Puglisi</name>
</noRegion>
<name sortKey="Cacciola, Santa Olga" sort="Cacciola, Santa Olga" uniqKey="Cacciola S" first="Santa Olga" last="Cacciola">Santa Olga Cacciola</name>
<name sortKey="Evoli, Maria" sort="Evoli, Maria" uniqKey="Evoli M" first="Maria" last="Evoli">Maria Evoli</name>
<name sortKey="Magnano Di San Lio, Gaetano" sort="Magnano Di San Lio, Gaetano" uniqKey="Magnano Di San Lio G" first="Gaetano" last="Magnano Di San Lio">Gaetano Magnano Di San Lio</name>
<name sortKey="Schena, Leonardo" sort="Schena, Leonardo" uniqKey="Schena L" first="Leonardo" last="Schena">Leonardo Schena</name>
</country>
</tree>
</affiliations>
</record>
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